PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00166.1.g00480.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 285aa    MW: 30695.4 Da    PI: 8.1364
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00166.1.g00480.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP93.54.3e-2943115371
                           TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa....s 71 
                                   g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl +a ++i++l+ ++++++     
  Zmw_sc00166.1.g00480.1.am.mk  43 GGKDRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLSAARHEIDKLPPLQFPPQdlmvG 115
                                   78*************************************************************8888833330 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.3E-2744105IPR005333Transcription factor, TCP
PROSITE profilePS5136929.70444102IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MISGSNRQAA DEEQARNHAA LASSRQWSAQ TESRIVRVSR VFGGKDRHSK VKTVKGLRDR  60
RVRLSVPTAI QLYDLQDRLG LNQPSKVVDW LLSAARHEID KLPPLQFPPQ DLMVGHLPAP  120
MPLMHEEKFD QLAAAAAALA RERAKAGHGD GAADAEGSGA HNMGRFPNIG YHHFMGLNSS  180
FAMVNSTMAY SNYSGEAWNI NMHENSAAGS PHVAAVAAAA AAGAQHSSLL SLAPGPHQLV  240
FYPSEGDQQF QVDNLAGAQH SSLLSLAPVS HQLVFYPSEG DRSSK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00008PBMTransfer from 496250Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970055.11e-115PREDICTED: transcription factor PCF5-like
TrEMBLA0A0A9B7Y01e-117A0A0A9B7Y0_ARUDO; Uncharacterized protein
STRINGSi002496m1e-115(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24903584